/*
   There are a total of 9 entries in the algebraic variable array.
   There are a total of 13 entries in each of the rate and state variable arrays.
   There are a total of 15 entries in the constant variable array.
 */
/*
 * VOI is time in component environment (second).
 * ALGEBRAIC[0] is v1 in component main (flux).
 * ALGEBRAIC[1] is v2 in component main (flux).
 * ALGEBRAIC[2] is v3 in component main (flux).
 * ALGEBRAIC[3] is v4 in component main (flux).
 * ALGEBRAIC[4] is v5 in component main (flux).
 * ALGEBRAIC[5] is v6 in component main (flux).
 * ALGEBRAIC[6] is v7 in component main (flux).
 * ALGEBRAIC[7] is v8 in component main (flux).
 * ALGEBRAIC[8] is v9 in component main (flux).
 * STATES[0] is MT1 in component main (molar).
 * STATES[1] is MT1cat in component main (molar).
 * STATES[2] is MT1T2 in component main (molar).
 * STATES[3] is MT1T2M2P in component main (molar).
 * STATES[4] is M2P in component main (molar).
 * STATES[5] is M2 in component main (molar).
 * STATES[6] is M2T2 in component main (molar).
 * STATES[7] is M2T2star in component main (molar).
 * STATES[8] is M2C1 in component main (molar).
 * STATES[9] is C1 in component main (molar).
 * STATES[10] is C1dmt1 in component main (molar).
 * STATES[11] is C1dm2 in component main (molar).
 * STATES[12] is T2 in component main (molar).
 * CONSTANTS[0] is kshed_eff in component model_parameters (second_order_rate_constant).
 * CONSTANTS[1] is kon_MT1T2 in component model_parameters (second_order_rate_constant).
 * CONSTANTS[2] is ki_MT1T2 in component model_parameters (molar).
 * CONSTANTS[3] is kon_MT1T2M2P in component model_parameters (second_order_rate_constant).
 * CONSTANTS[4] is koff_MT1T2M2P in component model_parameters (first_order_rate_constant).
 * CONSTANTS[5] is kact_eff_m2 in component model_parameters (second_order_rate_constant).
 * CONSTANTS[6] is kon_M2T2 in component model_parameters (second_order_rate_constant).
 * CONSTANTS[7] is ki_M2T2 in component model_parameters (molar).
 * CONSTANTS[8] is kiso_M2T2 in component model_parameters (first_order_rate_constant).
 * CONSTANTS[9] is k_iso_M2T2 in component model_parameters (first_order_rate_constant).
 * CONSTANTS[10] is kon_M2C1 in component model_parameters (second_order_rate_constant).
 * CONSTANTS[11] is koff_M2C1 in component model_parameters (first_order_rate_constant).
 * CONSTANTS[12] is kcat_M2C1 in component model_parameters (first_order_rate_constant).
 * CONSTANTS[13] is kcat_MT1C1 in component model_parameters (first_order_rate_constant).
 * CONSTANTS[14] is km_MT1C1 in component model_parameters (molar).
 * RATES[0] is d/dt MT1 in component main (molar).
 * RATES[1] is d/dt MT1cat in component main (molar).
 * RATES[2] is d/dt MT1T2 in component main (molar).
 * RATES[3] is d/dt MT1T2M2P in component main (molar).
 * RATES[4] is d/dt M2P in component main (molar).
 * RATES[5] is d/dt M2 in component main (molar).
 * RATES[6] is d/dt M2T2 in component main (molar).
 * RATES[7] is d/dt M2T2star in component main (molar).
 * RATES[8] is d/dt M2C1 in component main (molar).
 * RATES[9] is d/dt C1 in component main (molar).
 * RATES[10] is d/dt C1dmt1 in component main (molar).
 * RATES[11] is d/dt C1dm2 in component main (molar).
 * RATES[12] is d/dt T2 in component main (molar).
 * There are a total of 0 condition variables.
 */
void
initConsts(double* CONSTANTS, double* RATES, double *STATES)
{
STATES[0] = 100e-9;
STATES[1] = 0;
STATES[2] = 0;
STATES[3] = 0;
STATES[4] = 50e-9;
STATES[5] = 0;
STATES[6] = 0;
STATES[7] = 0;
STATES[8] = 0;
STATES[9] = 1e-6;
STATES[10] = 0;
STATES[11] = 0;
STATES[12] = 50e-9;
CONSTANTS[0] = 2.8e3;
CONSTANTS[1] = 3.54e6;
CONSTANTS[2] = 4.9e-9;
CONSTANTS[3] = 0.14e6;
CONSTANTS[4] = 4.7e-3;
CONSTANTS[5] = 2.8e3;
CONSTANTS[6] = 5.9e6;
CONSTANTS[7] = 1.07e-6;
CONSTANTS[8] = 33;
CONSTANTS[9] = 2e-8;
CONSTANTS[10] = 2.6e3;
CONSTANTS[11] = 2.1e-3;
CONSTANTS[12] = 4.5e-3;
CONSTANTS[13] = 1.97e-3;
CONSTANTS[14] = 2.9e-6;
RATES[0] = 0.1001;
RATES[1] = 0.1001;
RATES[2] = 0.1001;
RATES[3] = 0.1001;
RATES[4] = 0.1001;
RATES[5] = 0.1001;
RATES[6] = 0.1001;
RATES[7] = 0.1001;
RATES[8] = 0.1001;
RATES[9] = 0.1001;
RATES[10] = 0.1001;
RATES[11] = 0.1001;
RATES[12] = 0.1001;
}
void
computeResiduals(double VOI, double* CONSTANTS, double* RATES, double* OLDRATES, double* STATES,
                 double* OLDSTATES, double* ALGEBRAIC, double* CONDVARS)
{
resid[0] = RATES[0] - - ALGEBRAIC[0] - ALGEBRAIC[1];
resid[1] = RATES[1] - ALGEBRAIC[0];
resid[2] = RATES[2] - ALGEBRAIC[1] - ALGEBRAIC[2];
resid[3] = RATES[3] - ALGEBRAIC[2] - ALGEBRAIC[3];
resid[4] = RATES[4] - - ALGEBRAIC[2];
resid[5] = RATES[5] - (ALGEBRAIC[3] - ALGEBRAIC[4]) - ALGEBRAIC[6];
resid[6] = RATES[6] - ALGEBRAIC[4] - ALGEBRAIC[5];
resid[7] = RATES[7] - ALGEBRAIC[5];
resid[8] = RATES[8] - ALGEBRAIC[6] - ALGEBRAIC[7];
resid[9] = RATES[9] - - ALGEBRAIC[6] - ALGEBRAIC[8];
resid[10] = RATES[10] - ALGEBRAIC[8];
resid[11] = RATES[11] - ALGEBRAIC[7];
resid[12] = RATES[12] - - ALGEBRAIC[1] - ALGEBRAIC[4];
}
void
computeVariables(double VOI, double* CONSTANTS, double* RATES, double* STATES, double* ALGEBRAIC)
{
}
void
computeEssentialVariables(double VOI, double* CONSTANTS, double* RATES, double* STATES, double* ALGEBRAIC)
{
ALGEBRAIC[0] =  CONSTANTS[0]*STATES[0]*STATES[0];
ALGEBRAIC[1] =  CONSTANTS[1]*STATES[0]*STATES[12] -  CONSTANTS[2]*CONSTANTS[1]*STATES[2];
ALGEBRAIC[2] =  CONSTANTS[3]*STATES[2]*STATES[4] -  CONSTANTS[4]*STATES[3];
ALGEBRAIC[3] =  CONSTANTS[5]*STATES[0]*STATES[3];
ALGEBRAIC[4] =  CONSTANTS[6]*STATES[5]*STATES[12] -  CONSTANTS[6]*CONSTANTS[7]*STATES[6];
ALGEBRAIC[5] =  CONSTANTS[8]*STATES[6] -  CONSTANTS[9]*STATES[7];
ALGEBRAIC[6] =  CONSTANTS[10]*STATES[5]*STATES[9] -  CONSTANTS[11]*STATES[8];
ALGEBRAIC[7] =  CONSTANTS[12]*STATES[8];
ALGEBRAIC[8] =  (CONSTANTS[13]/CONSTANTS[14])*STATES[0]*STATES[9];
}
void
getStateInformation(double* SI)
{
SI[0] = 1.0;
SI[1] = 1.0;
SI[2] = 1.0;
SI[3] = 1.0;
SI[4] = 1.0;
SI[5] = 1.0;
SI[6] = 1.0;
SI[7] = 1.0;
SI[8] = 1.0;
SI[9] = 1.0;
SI[10] = 1.0;
SI[11] = 1.0;
SI[12] = 1.0;
}
void
computeRoots(double VOI, double* CONSTANTS, double* RATES, double* OLDRATES, double* STATES,
             double* OLDSTATES, double* ALGEBRAIC, double* CONDVARS)
{
}