Model Mathematics

Component: environment

Component: NatP

ddtimeNatP=v1+v3-v2

Component: MisP

ddtimeMisP=v2+v5+v23-v3+v4+2v39+v40+v49+v50+v51+v52+v53+v54+v55+v56

Component: Ub

ddtimeUb=v16+v17+v18+v19+v20+v21+v22+v23+v29+v30+v31+v32+v33+4v34+5v35+6v36+7v37+8v38-v6

Component: E1

ddtimeE1=v7-v6

Component: E2

ddtimeE2=v8+v9+v10+v11+v12+v13+v14+v15-v7

Component: E3

ddtimeE3=v5+v8-v4

Component: DUB

ddtimeDUB=v16+v17+v18+v19+v20+v21+v22+v23+v29+v30+v31+v32+v33-v16+v17+v18+v19+v20+v21+v22+v23+v29+v30+v31+v32+v33

Component: Proteasome

ddtimeProteasome=v29+v34+v35+v36+v37+v38-v24+v25+v26+v27+v28+v94

Component: ROS

ddtimeROS=v2-v2

Component: E1_Ub

ddtimeE1_Ub=v6-v7

Component: E2_Ub

ddtimeE2_Ub=v7-v8-v9-v10-v11-v12-v13-v14-v15

Component: E3_MisP

ddtimeE3_MisP=v4-v5-v8

Component: MisP_Ub

ddtimeMisP_Ub=v8+v22-v9+v23+2v41+v49+v57+v65+v66+v67+v68+v69+v70+v71

Component: MisP_Ub2

ddtimeMisP_Ub2=v9+v21-v10+v22+2v42+v50+v58+v65+v72+v73+v74+v75+v76+v77

Component: MisP_Ub3

ddtimeMisP_Ub3=v10+v20+v29-v11+v21+2v43+v51+v59+v66+v72+v78+v79+v80+v81+v82

Component: MisP_Ub4

ddtimeMisP_Ub4=v11+v19-v12+v20+v24+2v44+v52+v60+v67+v73+v78+v83+v84+v85+v86

Component: MisP_Ub5

ddtimeMisP_Ub5=v12+v18-v13+v19+v25+2v45+v53+v61+v68+v74+v79+v83+v87+v88+v89

Component: MisP_Ub6

ddtimeMisP_Ub6=v13+v17-v14+v18+v26+2v46+v54+v62+v69+v75+v80+v84+v87+v90+v91

Component: MisP_Ub7

ddtimeMisP_Ub7=v14+v16-v15+v17+v27+2v47+v55+v63+v70+v76+v81+v85+v88+v90+v92

Component: MisP_Ub8

ddtimeMisP_Ub8=v15-v16+v28+2v48+v56+v64+v71+v77+v82+v86+v89+v91+v92

Component: MisP_Ub4_Proteasome

ddtimeMisP_Ub4_Proteasome=v24+v30-v29+v34

Component: MisP_Ub5_Proteasome

ddtimeMisP_Ub5_Proteasome=v25+v31-v30+v35

Component: MisP_Ub6_Proteasome

ddtimeMisP_Ub6_Proteasome=v26+v32-v31+v36

Component: MisP_Ub7_Proteasome

ddtimeMisP_Ub7_Proteasome=v27+v33-v32+v37

Component: MisP_Ub8_Proteasome

ddtimeMisP_Ub8_Proteasome=v28-v33+v38

Component: ATP

ddtimeATP=0

Component: ADP

ddtimeADP=0

Component: AMP

ddtimeAMP=0

Component: degUb4

ddtimedegUb4=v34

Component: degUb5

ddtimedegUb5=v35

Component: degUb6

ddtimedegUb6=v36

Component: degUb7

ddtimedegUb7=v37

Component: degUb8

ddtimedegUb8=v38

Component: MisP_total

ddtimeMisP_total=v2

Component: NatP_refolded

ddtimeNatP_refolded=v3

Component: AggP

ddtimeAggP=v39+2v40+v41+v42+v43+v44+v45+v46+v47+v48+v49+v50+v51+v52+v53+v54+v55+v56+2v57+2v58+2v59+2v60+2v61+2v62+2v63+2v64+v65+v66+v67+v68+v69+v70+v71+v72+v73+v74+v75+v76+v77+v78+v79+v80+v81+v82+v83+v84+v85+v86+v87+v88+v89+v90+v91+v92-v40+v57+v58+v59+v60+v61+v62+v63+v64+v93+v94

Component: SeqAggP

ddtimeSeqAggP=v93

Component: AggP_Proteasome

ddtimeAggP_Proteasome=v94

Component: v1

v1=k1

Component: v2

v2=k2NatPROS

Component: v3

v3=k3MisP

Component: v4

v4=k61E3MisP

Component: v5

v5=k61rE3_MisP

Component: v6

v6=k62E1UbATP5000+ATP

Component: v7

v7=k63E2E1_Ub

Component: v8

v8=k64E2_UbE3_MisP

Component: v9

v9=k65E2_UbMisP_Ub

Component: v10

v10=k65E2_UbMisP_Ub2

Component: v11

v11=k65E2_UbMisP_Ub3

Component: v12

v12=k65E2_UbMisP_Ub4

Component: v13

v13=k65E2_UbMisP_Ub5

Component: v14

v14=k65E2_UbMisP_Ub6

Component: v15

v15=k65E2_UbMisP_Ub7

Component: v16

v16=k66DUBMisP_Ub8

Component: v17

v17=k66DUBMisP_Ub7

Component: v18

v18=k66DUBMisP_Ub6

Component: v19

v19=k66DUBMisP_Ub5

Component: v20

v20=k66DUBMisP_Ub4

Component: v21

v21=k66DUBMisP_Ub3

Component: v22

v22=k66DUBMisP_Ub2

Component: v23

v23=k66DUBMisP_Ub

Component: v24

v24=k67MisP_Ub4Proteasome

Component: v25

v25=k67MisP_Ub5Proteasome

Component: v26

v26=k67MisP_Ub6Proteasome

Component: v27

v27=k67MisP_Ub7Proteasome

Component: v28

v28=k67MisP_Ub8Proteasome

Component: v29

v29=k68DUBMisP_Ub4_Proteasome

Component: v30

v30=k68DUBMisP_Ub5_Proteasome

Component: v31

v31=k68DUBMisP_Ub6_Proteasome

Component: v32

v32=k68DUBMisP_Ub7_Proteasome

Component: v33

v33=k68DUBMisP_Ub8_Proteasome

Component: v34

v34=k69MisP_Ub4_ProteasomeATP5000+ATP

Component: v35

v35=k69MisP_Ub5_ProteasomeATP5000+ATP

Component: v36

v36=k69MisP_Ub6_ProteasomeATP5000+ATP

Component: v37

v37=k69MisP_Ub7_ProteasomeATP5000+ATP

Component: v38

v38=k69MisP_Ub8_ProteasomeATP5000+ATP

Component: v39

v39=k71MisPMisP-12

Component: v40

v40=k71MisPAggP

Component: v41

v41=k72MisP_UbMisP_Ub-12

Component: v42

v42=k72MisP_Ub2MisP_Ub2-12

Component: v43

v43=k72MisP_Ub3MisP_Ub3-12

Component: v44

v44=k72MisP_Ub4MisP_Ub4-12

Component: v45

v45=k72MisP_Ub5MisP_Ub5-12

Component: v46

v46=k72MisP_Ub6MisP_Ub6-12

Component: v47

v47=k72MisP_Ub7MisP_Ub7-12

Component: v48

v48=k72MisP_Ub8MisP_Ub8-12

Component: v49

v49=k72MisPMisP_Ub

Component: v50

v50=k72MisPMisP_Ub2

Component: v51

v51=k72MisPMisP_Ub3

Component: v52

v52=k72MisPMisP_Ub4

Component: v53

v53=k72MisPMisP_Ub5

Component: v54

v54=k72MisPMisP_Ub6

Component: v55

v55=k72MisPMisP_Ub7

Component: v56

v56=k72MisPMisP_Ub8

Component: v57

v57=k72AggPMisP_Ub

Component: v58

v58=k72AggPMisP_Ub2

Component: v59

v59=k72AggPMisP_Ub3

Component: v60

v60=k72AggPMisP_Ub4

Component: v61

v61=k72AggPMisP_Ub5

Component: v62

v62=k72AggPMisP_Ub6

Component: v63

v63=k72AggPMisP_Ub7

Component: v64

v64=k72AggPMisP_Ub8

Component: v65

v65=k72MisP_UbMisP_Ub2

Component: v66

v66=k72MisP_UbMisP_Ub3

Component: v67

v67=k72MisP_UbMisP_Ub4

Component: v68

v68=k72MisP_UbMisP_Ub5

Component: v69

v69=k72MisP_UbMisP_Ub6

Component: v70

v70=k72MisP_UbMisP_Ub7

Component: v71

v71=k72MisP_UbMisP_Ub8

Component: v72

v72=k72MisP_Ub2MisP_Ub3

Component: v73

v73=k72MisP_Ub2MisP_Ub4

Component: v74

v74=k72MisP_Ub2MisP_Ub5

Component: v75

v75=k72MisP_Ub2MisP_Ub6

Component: v76

v76=k72MisP_Ub2MisP_Ub7

Component: v77

v77=k72MisP_Ub2MisP_Ub8

Component: v78

v78=k72MisP_Ub3MisP_Ub4

Component: v79

v79=k72MisP_Ub3MisP_Ub5

Component: v80

v80=k72MisP_Ub3MisP_Ub6

Component: v81

v81=k72MisP_Ub3MisP_Ub7

Component: v82

v82=k72MisP_Ub3MisP_Ub8

Component: v83

v83=k72MisP_Ub4MisP_Ub5

Component: v84

v84=k72MisP_Ub4MisP_Ub6

Component: v85

v85=k72MisP_Ub4MisP_Ub7

Component: v86

v86=k72MisP_Ub4MisP_Ub8

Component: v87

v87=k72MisP_Ub5MisP_Ub6

Component: v88

v88=k72MisP_Ub5MisP_Ub7

Component: v89

v89=k72MisP_Ub5MisP_Ub8

Component: v90

v90=k72MisP_Ub6MisP_Ub7

Component: v91

v91=k72MisP_Ub6MisP_Ub8

Component: v92

v92=k72MisP_Ub7MisP_Ub8

Component: v93

v93=k73AggP

Component: v94

v94=k74AggPProteasome

Component: kinetic_parameters