Baumeister
Anja
1
128
In Vivo Dynamics of the Pentose Phosphate Pathway in Saccharomyces cerevisiae
140
Corrected some of the equations so the CellML model now reflects the model in the original publication.
sedoheptulose 7-phosphate
C_S7P
ribose 5-phosphate
C_R5P
G6P
glucose-6-phosphate
Replaced the reaction element with simple MathML equations to better describe the original publication.
Rizzi
Manfred
100000.0
C_X5P
xylulose 5-phosphate
May
Catherine
Lloyd
The University of Auckland, Bioengineering Institute
c.lloyd@auckland.ac.nz
A model of the pentose phosphate pathway in the yeast Saccharomyces
cerevisiae
2007-06-13T00:00:00+00:00
2007-06-20T11:42:32+12:00
This is the CellML description of Vaseghi et al's mathematical model of the pentose phosphate pathway in the yeast Saccharomyces cerevisiae (1999).
This CellML model is known to run in both PCEnv and COR, however at present it does not seem to be recreating the published results - possibly beause we need to include a description of a glucose pulse in the CellML model. We are continuing to work on the model. The units have been checked and they are consistent.
The University of Auckland
The Bioengineering Institute
Metabolic Engineering
C_E4P
erythrose 4-phosphate
May
Catherine
Lloyd
Cai
Yizhi
Matthias
Reuss
keyword
C_Ru5P
ribulose 5-phosphate
10935926
Added some initial conditions to the ODEs, altered some equations to better reflect the paper, and unit balanced several equations.
6-phosphogluconate
C_6PG
2008-11-03T15:02:03+13:00
Sam
Vaseghi
metabolism
yeast
Lloyd
Catherine
May
Catherine Lloyd
2007-06-14T08:03:30+12:00
Catherine Lloyd
1999-04