FAIRDO BG example 3.5.cellml

Bond graph example: A biochemical reaction with mixed stoichiometry

Consider a reaction in compartment c with two reactants q1c, q2c and two products q3c, q4c, with the stoichiometry shown below.

Schematic and bond graph of the model

A biochemical reaction with 2 reactants and 2 products (a), and its bond graph representation (b).

The Views Available menu to the right provides various options to explore this model here in the Physiome Model Repository. Of particular interest is the Launch with OpenCOR menu item, which will load the simulation experiment shown below directly into the OpenCOR desktop application.

OpenCOR showing simulation experiment.

Showing the result of launching the simulation experiment from this exposure in OpenCOR and executing the simulation.