Following best practices, this model separates the mathematics from the parameterisation of the model. The mathematical model is imported into a specific parameterised instance in order to perform numerical simulations. The parameterisation would include defining the stimulus protocol to be applied.

This workspace has three sets of experiment:

  1. Periodic stimulation
  2. Voltage clamp experiment
  3. Action potential propagation along 1D cable model

Simulation settings

Simulation settings are encoded in SED-ML documents for experiment execution. The python scripts to run simulation and reproduce the figures in the original paper are also included.