Generated Code

The following is c_ida code generated by the CellML API from this CellML file. (Back to language selection)

The raw code is available.

/*
   There are a total of 9 entries in the algebraic variable array.
   There are a total of 2 entries in each of the rate and state variable arrays.
   There are a total of 13 entries in the constant variable array.
 */
/*
 * VOI is t in component main (second).
 * CONSTANTS[0] is V_m in component main (J_per_C).
 * CONSTANTS[1] is RTF in component main (J_per_C).
 * CONSTANTS[10] is epsilon in component main (dimensionless).
 * STATES[0] is TA_i in component main (mol_per_m3).
 * ALGEBRAIC[0] is CO2_o in component main (mol_per_m3).
 * ALGEBRAIC[4] is CO2_i in component main (mol_per_m3).
 * ALGEBRAIC[5] is HCO3_i in component main (mol_per_m3).
 * ALGEBRAIC[1] is HCO3_o in component main (mol_per_m3).
 * STATES[1] is H_i in component main (mol_per_m3).
 * CONSTANTS[2] is H_o in component main (mol_per_m3).
 * CONSTANTS[3] is H_Lim in component main (mol_per_m3).
 * ALGEBRAIC[6] is M_CO2 in component main (mol_per_m2_s).
 * ALGEBRAIC[7] is M_HCO3 in component main (mol_per_m2_s).
 * ALGEBRAIC[8] is M_H in component main (mol_per_m2_s).
 * ALGEBRAIC[2] is pH_i in component main (dimensionless).
 * CONSTANTS[11] is pH_o in component main (dimensionless).
 * CONSTANTS[12] is pH_Lim in component main (dimensionless).
 * CONSTANTS[4] is P_CO2 in component main (m_per_s).
 * CONSTANTS[5] is P_HCO3 in component main (m_per_s).
 * CONSTANTS[6] is k in component main (m_per_s).
 * CONSTANTS[7] is K_A in component main (mol_per_m3).
 * CONSTANTS[8] is rho in component main (per_m).
 * ALGEBRAIC[3] is alpha_i in component main (dimensionless).
 * CONSTANTS[9] is beta in component main (mol_per_m3).
 * RATES[0] is d/dt TA_i in component main (mol_per_m3).
 * RATES[1] is d/dt H_i in component main (mol_per_m3).
 * There are a total of 3 condition variables.
 */
void
initConsts(double* CONSTANTS, double* RATES, double *STATES)
{
CONSTANTS[0] = -0.057;
CONSTANTS[1] = 0.0256796;
STATES[0] = 0.0;
STATES[1] = 3.981071705534970e-05;
CONSTANTS[2] = 1.995262314968879e-05;
CONSTANTS[3] = 3.981071705534970e-05;
CONSTANTS[4] = 6e-5;
CONSTANTS[5] = 5e-9;
CONSTANTS[6] = 0.0375;
CONSTANTS[7] = 1e-3;
CONSTANTS[8] = 8000;
CONSTANTS[9] = -26;
CONSTANTS[10] = exp(- CONSTANTS[0]/CONSTANTS[1]);
CONSTANTS[11] = - arbitrary_log( 0.00100000*CONSTANTS[2], 10);
CONSTANTS[12] = - arbitrary_log( 0.00100000*CONSTANTS[3], 10);
RATES[0] = 0.1;
RATES[1] = 0.1;
}
void
computeResiduals(double VOI, double* CONSTANTS, double* RATES, double* OLDRATES, double* STATES,
                 double* OLDSTATES, double* ALGEBRAIC, double* CONDVARS)
{
resid[0] = RATES[0] -  CONSTANTS[8]*(ALGEBRAIC[6]+ALGEBRAIC[7]);
resid[1] = RATES[1] -  (( - 2.30300*STATES[1])/CONSTANTS[9])*CONSTANTS[8]*(( (1.00000 - ALGEBRAIC[3])*ALGEBRAIC[6] -  ALGEBRAIC[3]*ALGEBRAIC[7]) - ALGEBRAIC[8]);
}
void
computeVariables(double VOI, double* CONSTANTS, double* RATES, double* STATES, double* ALGEBRAIC)
{
}
void
computeEssentialVariables(double VOI, double* CONSTANTS, double* RATES, double* STATES, double* ALGEBRAIC)
{
ALGEBRAIC[3] = STATES[1]/(STATES[1]+CONSTANTS[7]);
ALGEBRAIC[0] = (CONDVAR[0]<0.00000 ? 0.00000 : CONDVAR[1]<0.00000 ? 1.18770 : 0.00000);
ALGEBRAIC[4] =  ALGEBRAIC[3]*STATES[0];
ALGEBRAIC[6] =  CONSTANTS[4]*(ALGEBRAIC[0] - ALGEBRAIC[4]);
ALGEBRAIC[5] =  (1.00000 - ALGEBRAIC[3])*STATES[0];
ALGEBRAIC[1] = ( CONSTANTS[7]*ALGEBRAIC[0])/CONSTANTS[2];
ALGEBRAIC[7] = ( (( CONSTANTS[5]*CONSTANTS[0])/CONSTANTS[1])*(ALGEBRAIC[1] -  ALGEBRAIC[5]*CONSTANTS[10]))/(1.00000 - CONSTANTS[10]);
ALGEBRAIC[2] = - arbitrary_log( 0.00100000*STATES[1], 10);
ALGEBRAIC[8] = (CONDVAR[2]<0.00000 ?  CONSTANTS[6]*(STATES[1] - CONSTANTS[3]) : 0.00000);
}
void
getStateInformation(double* SI)
{
SI[0] = 1.0;
SI[1] = 1.0;
}
void
computeRoots(double VOI, double* CONSTANTS, double* RATES, double* OLDRATES, double* STATES,
             double* OLDSTATES, double* ALGEBRAIC, double* CONDVARS)
{
CONDVAR[0] = VOI - 100.000;
CONDVAR[1] = VOI - 2800.00;
CONDVAR[2] = ALGEBRAIC[2] - CONSTANTS[12];
}